Publications

2017

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Stefan Coassin, Gertraud Erhart, Hansi Weissensteiner, Mariana Eca Guimaraes de Araujo, Claudia Lamina, Sebastian Schönherr, Lukas Forer, Margot Haun, Jamie Lee Losso, Anna Köttgen, Gerd Uterman, Annette Peters, Christian Gieger, Konstantin Strauch, Armin Finkenstedt, Reto Bale, Heinz Zoller, Bernhard Paulweber, Kai-Uwe Eckardt, Alexander Hüttenhofer, Lukas Huber and Florian Kronenberg: A novel but frequent variant in LPA KIV-2 is associated with a pronounced Lp(a) and cardiovascular risk reduction. In European Heart Journal - in press. Wiley Online Library, 2017

2016

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Lukas Forer, Enis Afgan, Hansi Weissensteiner, Davor Davidovic, Guenther Specht, Florian Kronenberg and Sebastian Schoenherr: Cloudflow-enabling faster biomedical pipelines with MapReduce and Spark. In Scalable Computing: Practice and Experience, vol. 17, no. 2, pages 103-114. 2016

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Hansi Weissensteiner, Dominic Pacher, Anita Kloss-Brandstätter, Lukas Forer, Günther Specht, Hans-Jürgen Bandelt, Florian Kronenberg, Antonio Salas and Sebastian Schönherr: HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing. In Nucleic Acids Research, vol. 44, no. W1, pages W58. 2016

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Hansi Weissensteiner, Lukas Forer, Christian Fuchsberger, Bernd Schöpf, Anita Kloss-Brandstätter, Günther Specht, Florian Kronenberg and Sebastian Schönherr: mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud. In Nucleic Acids Research, vol. 44, no. W1, pages W64. 2016

2015

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L. Forer, E. Afgan, H. Weißensteiner, D. Davidović, G. Specht, F. Kronenberg and S. Schönherr: Cloudflow - A framework for MapReduce pipeline development in Biomedical Research. In 2015 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), pages 172-177. 2015

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Julia Raschenberger, Barbara Kollerits, Stephanie Titze, Anna Köttgen, Barbara Bärthlein, Arif B. Ekici, Lukas Forer, Sebastian Schönherr, Hansi Weissensteiner, Margot Haun, Christoph Wanner, Kai-Uwe Eckardt and Florian Kronenberg: Do telomeres have a higher plasticity than thought? Results from the German Chronic Kidney Disease (GCKD) study as a high-risk population. In Experimental gerontology, vol. 72, pages 162-166. Pergamon, 2015

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Anita Kloss-Brandstätter, Hansi Weissensteiner, Gertraud Erhart, Georg Schäfer, Lukas Forer, Sebastian Schönherr, Dominic Pacher, Christof Seifarth, Andrea Stöckl, Liane Fendt, Irma Sottsas, Helmut Klocker, Christian W. Huck, Michael Rasse, Florian Kronenberg and Frank R. Kloss: Validation of next-generation sequencing of entire mitochondrial genomes and the diversity of mitochondrial DNA mutations in oral squamous cell carcinoma. In PloS one, vol. 10, no. 8, pages e0135643. Public Library of Science, 2015

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Julia Raschenberger, Barbara Kollerits, Stephanie Titze, Anna K Koettgen, Barbara B Baerthlein, Arif B Ekici, Lukas Forer, Sebastian Schönherr, Hansi Weissensteiner, Margot Haun, Christoph Wanner, Kai-Uwe Eckardt and Florian Kronenberg: Association of relative telomere length with cardiovascular disease in a large chronic kidney disease cohort: the GCKD study. In Atherosclerosis, vol. 242, no. 2, pages 529-534. Elsevier, 2015

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Fernanda S. G. Kehdy, Mateus H. Gouveia, Moara Machado, Wagner C. S. Magalhaes, Andrea R. Horimoto, Bernardo L. Horta, Rennan G. Moreira, Thiago P. Leal, Marilia O. Scliar, Giordano B. Soares-Souza, Fernanda Rodrigues-Soares, Gilderlanio S. Araújoa, Roxana Zamudio, Hanaisa P. Sant Anna, Hadassa C. Santos, Nubia E. Duarte, Rosemeire L. Fiaccone, Camila a. Figueiredo, Thiago M. Silva, Gustavo N. O. Costa, Sandra Beleza, Douglas E. Berg, Lilia Cabrera, Guilherme Debortoli, Denise Duarte, Silvia Ghirotto, Robert H. Gilman, Vanessa F. Goncalves, Andrea R. Marrero, Yara C.

2014

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Claudia Lamina, Johannes Linsenmeyer, Hansi Weissensteiner, Barbara Kollerits, Christa Meisinger, Barbara Rantner, Doris Stöckl, Marietta Stadler, Peter Klein-Weigel, Annette Peters and others: Correlation between a positive family risk score and peripheral artery disease in one case-control and two population-based studies. In Atherosclerosis, vol. 237, no. 1, pages 243-250. Elsevier, 2014

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Lukas Forer, Tomislav Lipic, Sebastian Schönherr, Hansi Weissensteiner, Davor Davidovic, Florian Kronenberg and Enis Afgan: Delivering bioinformatics mapreduce applications in the cloud. In Information and Communication Technology, Electronics and Microelectronics (MIPRO), 2014 37th International Convention on, pages 373-377. 2014

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Monika Summerer, Jürgen Horst, Gertraud Erhart, Hansi Weissensteiner, Sebastian Schönherr, Dominic Pacher, Lukas Forer, David Horst, Angelika Manhart, Basil Horst, Torpong Sanguansermsri and Anita Kloss-Brandstätter: Large-scale mitochondrial DNA analysis in Southeast Asia reveals evolutionary effects of cultural isolation in the multi-ethnic population of Myanmar. In BMC evolutionary biology, vol. 14, no. 1, pages 17. BioMed Central, 2014

2013

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Hansi Weissensteiner, Margot Haun, Sebastian Schönherr, Mathias Neuner, Lukas Forer, Günther Specht, Anita Kloss-Brandstätter, Florian Kronenberg, Stefan Coassin: SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays. In PLOS ONE, vol. 8, no. 3, pages 1-9. Public Library of Science, 2013

2012

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Lukas Forer, Sebastian Schönherr, Hansi Weissensteiner, Günther Specht, Florian Kronenberg and Anita Kloss-Brandstätter: Cloud Computing - Bringing computational power to medical genetics. In: Zlatko Trajanoski (Ed.): Computational Medicine: Tools and Challenges, 203 p., Springer 2012, ISBN: 978-3-7091-0946-5, pp. 27-36

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Sebastian Schönherr, Lukas Forer, Hansi Weißensteiner, Florian Kronenberg, Günther Specht and Anita Kloss-Brandstätter: Cloudgene: A graphical execution platform for MapReduce programs on private and public clouds. In BMC Bioinformatics, vol. 13, no. 1, pages 200. 2012

2011

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Sebastian Schönherr, Lukas Forer, Hansi Weißensteiner, Florian Kronenberg, Günther Specht and Anita Kloss-Brandstätter: A feedback guided interface for elastic computing.. In Grundlagen von Datenbanken, pages 109-114. 2011

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Anita Kloss-Brandstätter, Dominic Pacher, Sebastian Schönherr, Hansi Weissensteiner, Robert Binna, Günther Specht and Florian Kronenberg: HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. In Human Mutation, vol. 32, no. 1, pages 25-32. Wiley Subscription Services, Inc., A Wiley Company, 2011

2010

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Lukas Forer, Sebastian Schönherr, Hansi Weissensteiner, Florian Haider, Thomas Kluckner, Christian Gieger, Heinz-Erich Wichmann, Günther Specht, Florian Kronenberg and Anita Kloss-Brandstätter: CONAN: copy number variation analysis software for genome-wide association studies. In BMC Bioinformatics, vol. 11, no. 1, pages 318. 2010

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Hansi Weißensteiner, Sebastian Schönherr, Günther Specht, Florian Kronenberg and Anita Brandstätter: eCOMPAGT integrates mtDNA: Import, Validation and Export of Mitochondrial DNA Profiles for Population Genetics, Tumour Dynamics and Genotype-Phenotype Association Studies. In BMC Bioinformatics, vol. 11, no. 1, pages 122. 2010

2009

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Sebastian Schönherr, Hansi Weißensteiner, Stefan Coassin, Günther Specht, Florian Kronenberg and Anita Brandstätter: eCOMPAGT - efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology. In BMC Bioinformatics, vol. 10, no. 1, pages 139. 2009